UNIX Shell, PERL, PHP, Python, Ruby, R, AppleScript, Bioinformatics, Chemistry, Physics, Astronomy, Geography, Cognitive Science, Automator Actions, Ecology, Oceanography, Matlab/Octave
The Ultimate Astro Widget
Description:
This is a Dashboard widget for Mac OS X Tiger. It computes the UTC, LST, JD and MJD for provided observatories in the world. It can also computed airmass curves and observablities. It is not a script by itself rather than a collection of CSS, Javascript, HTML, Python and C scripts... But it provides excellent examples computations n javascript, how to manage XML files and XMLHttpRequests in Javascripts, as well as some basic python stuff.
Author's Email:
cfoellmi@free.fr
Author's Homepage:
http://cfoellmi.free.fr
Script File:
UltimateAstroWidget.zip (644.86 KB)
NCSAstore.pl
Description:
This is a script to put on the end of your NCSA batch files, to do parallel uploads to mass storage at the end of your runs. It should be possible to adjust this script to work with other supercomputers too.
Sample usage is
# Designate storage directory on MSS
set STORAGE_DIR="Runs/Flash25/bhl/exe01"
# Make the file list
\ls -1 --hide-control-chars *hdf* *log flash.dat > files.txt
Author's Email:
rge21@pas.rochester.edu
Author's Full Name:
Richard Edgar
Author's Homepage:
http://www.pas.rochester.edu/~rge21/computing/programs/ncsastore/index.shtml
Script File:
NCSAstore.pl (2.8 KB)
simpdftexnodel: A simpdftex that is compatible with Skim 0.5+ autorefreshes from disk.
Description:
The simpdftex that comes with most LaTeX distributions is not compatible with the auto-refresh features of Skim version 0.5 and up.
This simpdftexnodel (where "nodel" is short for "no delete") is compatible with Skim.
Author's Email:
ted@tedpavlic.com
Author's Full Name:
Ted Pavlic
Author's Homepage:
http://phaseportrait.blogspot.com/2007/07/skim-automatic-refreshes-and-simpdftex.html
Script File:
simpdftexnodel.gz (7.63 KB)
ANOVA for study of algorithmic components
Description:
To study the performance of a parallel ACO algorithm with various components (interconnection topology, migration frequency, number of CPUs) I wrote this R script to perform an ANOVA on the experimental results.
Hope it could be a start point for others with similar needs.
Author's Email:
mmanfrin@iridia.ulb.ac.be
Author's Full Name:
Max Manfrin
Author's Homepage:
http://iridia.ulb.ac.be/~mmanfrin/
Script File:
ANOVA-30-10000-small.zip (80.77 KB)
Ruby Bioinformatics code(very basic)
Description:
This code is ported from the Python code in "Beginning Python for Bioinformatics" by Patrick O'Brien. This code has not been heavily tested(only lightly tested), so use at your own risk.
Author's Homepage:
http://gavmacprogramming.wordpress.com/2007/03/29/exploring-bioinformatics-with-ruby/
Script File:
bioinformatics_april.zip (11.8 KB)
multi_chemprops.scpt
Description:
This script takes as input a file containing SMILES strings and calculates a variety of chemical properties using ChemDraw.
Author's Email:
swain@mac.com
Author's Homepage:
http://www.macinchem.org/
Script File:
multi_chemprops.scpt.zip (9.17 KB)
Comparison of metaheuristics' performance: boxplot and non-parametric test
Description:
For a full description see the URL:
http://iridia.ulb.ac.be/wiki/index.php/Repository_of_scripts_used_by_IRIDIA_members
Author's Email:
mmanfrin@ulb.ac.be
Author's Full Name:
Max Manfrin
Author's Homepage:
http://iridia.ulb.ac.be/~mmanfrin/
Script File:
R-analysis.zip (3.43 MB)
Forpedo v0.1.1
Description:
Forpedo is a preprocessor for Fortran that supports generic programming and run-time polymorphism.
Author's Email:
drewmccormack@mac.com
Author's Full Name:
Drew McCormack
Author's Homepage:
http://www.macanics.net
Script File:
forpedo.zip (20.37 KB)
ChemDraw to Tiff
Description:
Converts ChemDraw files to TIFF format for publication
Author's Email:
swain@mac.com
Author's Homepage:
www.macinchem.org
Script File:
Convert_ChemDraw_to_TIFF.zip (9.18 KB)
Get Selected Papers
Description:
This is an AppleScript designed to work with BibDesk. It gets the current selection of publications in the front document of BibDesk, and assuming each publication is associated to a local file, it duplicates each file to a "SelectedPapers" folder on the desktop of the current user. Handy for collecting in a folder all papers meeting certain search criteria.
Author's Email:
marco_coisson@mac.com
Author's Full Name:
Marco Coïsson
Author's Homepage:
http://homepage.mac.com/marco_coisson
Script File:
Get_Selected_Papers.scpt.zip (3.09 KB)


