dp.pl
Description:
This perl script reads a text file containing a list of PDB ID's. The script downloads the fasta formatted sequence file corresponding to the PDB ID's in the test file from the RCSB website. The domain information corresponding to the PDB ID's is downloaded from the NCBI MMDB website. PSIPRED and the domain prediction program PPRODO is run on each PDB ID. The results of the domain prediction and the domains information from MMDB are written to a text file. This script was written for testing domain prediction software. It may serve as a good example for writing similar scripts. PSIPRED, PPRODO, and a network connection is required be this script. PPRODO can be found at http://gene.kias.re.kr/~jlee/pprodo/
Author's Email:
paul_a_wilson@mac.com
Author's Full Name:
Paul A. Wilson
Author's Homepage:
http://homepage.mac.com/paul_a_wilson/
Script File:
dp.pl.tar.gz (4.55 KB)
